Jinfeng Zhang
Computational biology and bioinformatics
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Integrated Bio-entity Network for Automatic Biological Knowledge Discovery
Discovering new pathway - protein relationships through IBN
Pathway name:
3' -utr-mediated translational regulation
a4b1 and a4b7 integrin signaling
a6b1 and a6b4 integrin signaling
activation of cdc25a by c-myc
alk1 pathway
alk1 signaling events
alk2 signaling events
alpha-synuclein signaling
alternative nf-kappab pathway
amb2 integrin signaling
amine compound slc transporters
amino acid and oligopeptide slc transporters
angiopoietin receptor tie2-mediated signaling
apc-cdc20 mediated degradation of nek2a
apc/c:cdh1-mediated degradation of skp2
apoptosis
arf1 pathway
arf6 downstream pathway
arf6 signaling events
arf6 trafficking events
atf-2 transcription factor network
atypical nf-kappab pathway
aurora a signaling
aurora b signaling
aurora c signaling
axon guidance
bard1 signaling events
bcr signaling pathway
bile salt and organic anion slc transporters
biological oxidations
bmp receptor signaling
botulinum neurotoxicity
breakdown of hydrogen peroxide to water and molecular oxygen
c-myb transcription factor network
calcineurin-regulated nfat-dependent transcription in lymphocytes
calcium signaling in the cd4+ tcr pathway
canonical nf-kappab pathway
canonical wnt signaling pathway
caspase cascade in apoptosis
cd40/cd40l signaling
cdc20:phospho-apc/c mediated degradation of cyclin a
cdc42 signaling events
cell cycle checkpoints
cell cycle, mitotic
cell junction organization
cellular roles of anthrax toxin
ceramide signaling pathway
circadian rhythm pathway
class i pi3k signaling events
class i pi3k signaling events mediated by akt
class ib pi3k non-lipid kinase events
cooperation of prefoldin and tric/cct in actin and tubulin folding
coregulation of androgen receptor activity
cxcr3-mediated signaling events
cxcr4-mediated signaling events
diabetes pathways
direct p53 effectors
dna repair
dna replication
e-cadherin signaling events
e-cadherin signaling in keratinocytes
e-cadherin signaling in the nascent adherens junction
e2f transcription factor network
effects of botulinum toxin
egf receptor (erbb1) signaling pathway
egfr-dependent endothelin signaling events
elongation arrest and recovery
endothelins
epha forward signaling
epha2 forward signaling
ephb forward signaling
ephrin a reverse signaling
ephrin b reverse signaling
ephrina-epha pathway
ephrinb-ephb pathway
epo signaling pathway
erbb receptor signaling network
erbb1 downstream signaling
erbb2/erbb3 signaling events
erbb4 signaling events
eukaryotic translation termination
fas signaling pathway (cd95)
fc-epsilon receptor i signaling in mast cells
fgf signaling pathway
formation of paps
foxa transcription factor networks
foxa1 transcription factor network
foxa2 and foxa3 transcription factor networks
foxm1 transcription factor network
foxo family signaling
further platelet releasate
gap junction trafficking and regulation
gene expression
glucocorticoid receptor regulatory network
glyoxylate metabolism
glypican 1 network
glypican 2 network
glypican 3 network
glypican pathway
hedgehog signaling events mediated by gli proteins
hemostasis
hif-1-alpha transcription factor network
hif-2-alpha transcription factor network
hiv infection
hiv-1 elongation arrest and recovery
hiv-1 nef: negative effector of fas and tnf-alpha
hormone biosynthesis
hypoxic and oxygen homeostasis regulation of hif-1-alpha
ifn-gamma pathway
igf1 pathway
il1-mediated signaling events
il12 signaling mediated by stat4
il12-mediated signaling events
il2 signaling events mediated by pi3k
il2 signaling events mediated by stat5
il2-mediated signaling events
il23-mediated signaling events
il27-mediated signaling events
il4-mediated signaling events
il6-mediated signaling events
influenza infection
inhibition of hsl
insulin degradation
insulin pathway
insulin receptor mediated signaling
insulin-mediated glucose transport
integration of energy metabolism
integrin cell surface interactions
integrins in angiogenesis
internalization of erbb1
jnk signaling in the cd4+ tcr pathway
lissencephaly gene (lis1) in neuronal migration and development
lkb1 signaling events
lpa receptor mediated events
lpa4-mediated signaling events
mal cascade
membrane trafficking
metabolism of amino acids and derivatives
metabolism of carbohydrates
metabolism of lipids and lipoproteins
metabolism of nitric oxide
metabolism of nucleotides
metabolism of porphyrins
metabolism of proteins
metabolism of rna
metabolism of vitamins and cofactors
metal ion slc transporters
mitochondrial uncoupling proteins
mrna processing
mtor signaling pathway
muscle contraction
myogenesis
n-cadherin signaling events
nadph regeneration
nectin adhesion pathway
nephrin/neph1 signaling in the kidney podocyte
neurotrophic factor-mediated trk receptor signaling
noncanonical wnt signaling pathway
nongenotropic androgen signaling
opioid signalling
osteopontin-mediated events
p38 mapk signaling pathway
p38 signaling mediated by mapkap kinases
p53 pathway
p75(ntr)-mediated signaling
pausing and recovery of elongation
pausing and recovery of hiv-1 elongation
pausing and recovery of tat-mediated hiv-1 elongation
paxillin-dependent events mediated by a4b1
paxillin-independent events mediated by a4b1 and a4b7
pdgfr-alpha signaling pathway
pdgfr-beta signaling pathway
phase 1 functionalization
plasma membrane estrogen receptor signaling
plc-mediated hydrolysis of pip2
plk1 signaling events
plk2 and plk4 events
plk3 signaling events
polo-like kinase signaling events in the cell cycle
post-chaperonin tubulin folding pathway
presenilin action in notch and wnt signaling
processing of capped intron-containing pre-mrna
propionyl-coa catabolism
proteogylcan syndecan-mediated signaling events
pyrophosphate hydrolysis
pyruvate metabolism and citric acid (tca) cycle
rac1 signaling pathway
rapid glucocorticoid signaling
ras signaling in the cd4+ tcr pathway
reelin signaling pathway
regulation of activated pak-2p34 by proteasome mediated degradation
regulation of androgen receptor activity
regulation of beta-cell development
regulation of cdc42 activity
regulation of cytoplasmic and nuclear smad2/3 signaling
regulation of nuclear smad2/3 signaling
regulation of p38-alpha and p38-beta
regulation of pak-2p34 activity by ps-gap
regulation of retinoblastoma protein
regulation of rhoa activity
regulation of telomerase
regulatory rna pathways
retinoic acid receptors-mediated signaling
role of calcineurin-dependent nfat signaling in lymphocytes
rxr and rar heterodimerization with other nuclear receptor
s1p1 pathway
s1p2 pathway
s1p3 pathway
s1p4 pathway
s1p5 pathway
signal attenuation
signaling by aurora kinases
signaling by bmp
signaling by egfr
signaling by fgfr
signaling by gpcr
signaling by insulin receptor
signaling by notch
signaling by pdgf
signaling by rho gtpases
signaling by tgf beta
signaling by vegf
signaling by wnt
signaling events activated by hepatocyte growth factor receptor (c-met)
signaling events mediated by hdac class i
signaling events mediated by hdac class ii
signaling events mediated by hdac class iii
signaling events mediated by prl
signaling events mediated by ptp1b
signaling events mediated by stem cell factor receptor (c-kit)
signaling events mediated by the hedgehog family
signaling events mediated by vegfr1 and vegfr2
signaling events regulated by ret tyrosine kinase
signaling in immune system
signaling mediated by p38-alpha and p38-beta
signaling mediated by p38-gamma and p38-delta
signalling by ngf
sphingosine 1-phosphate (s1p) pathway
stabilization and expansion of the e-cadherin adherens junction
sumoylation by ranbp2 regulates transcriptional repression
synaptic transmission
syndecan-1-mediated signaling events
syndecan-2-mediated signaling events
syndecan-3-mediated signaling events
syndecan-4-mediated signaling events
synthesis of cx32
synthesis of cx43
synthesis of cx45
tat-mediated hiv-1 elongation arrest and recovery
tcr signaling in naïve cd4+ t cells
tcr signaling in naïve cd8+ t cells
telomere maintenance
tgf-beta receptor signaling
thromboxane a2 receptor signaling
tnf receptor signaling pathway
trail signaling pathway
transcription
transmembrane transport of small molecules
transport of connexins along the secretory pathway
trk receptor signaling mediated by pi3k and plc-gamma
trk receptor signaling mediated by the mapk pathway
vegfr1 specific signals
vegfr3 signaling in lymphatic endothelium
visual signal transduction: cones
visual signal transduction: rods
wnt signaling
xanthine formation
Output bio-entity type:
Proteins
Small molecules
Probability:
0.5
0.6
0.7
0.8
0.9
1