Publications

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Publications and Conference Presentations

Structure-based RNA Function Prediction using Elastic Shape Analysis. Laborde J., Srivastava A., Zhang J. 2011. IEEE International Conference on Bioinformatics and Biomedicine. DOI 10.1109/BIBM.2011.119. (acceptance rate 19.40%)

RNA global alignment in the joint sequence–structure space using elastic shape analysis. Jose Laborde, Daniel Robinson, Anuj Srivastava, Eric Klassen, and Jinfeng Zhang.  Nucl. Acids Res. (2013) 41 (11): e114. doi:10.1093/nar/gkt187

An Efficient Multiple Protein Structure Comparison Method and its Application to Structure Clustering and Outlier Detection.  Wei Wu, Anuj Srivastava, Jose Laborde, Jinfeng Zhang. IEEE-BIBM 2013 (Acceptance rate 18.00%).

RASS: A webserver for RNA alignment in the joint sequence-structure space.   He, Gewen; Steppi, Albert; Laborde, Jose; Srivastava, Anuj; Zhao, Peixiang; Zhang, Jinfeng NAR-00287-2014

Papers in preparation

Laborde J., Srivastava A., Zhang J.  Alignment of proteins in the joint sequence-structure space.

Laborde J., Srivastava A., Zhang J.  Protein/RNA networks based on Elastic Shape Geodesic Distances.  

Laborde J., Santos R., Long H., Srivastava A., Zhang J.  On the Statistical Distribution of Pairwise Elastic Shape Distances of Biomolecules.

Laborde J., Zhang J., Srivastava A.  Fast distance based classification of protein domains by Multiple Centroid Class Partitioning

Invited Presentations

Statistics Club, Research Overview, FSU 2011